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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 160 new columns ({'IDL-L', 'XS-VLDL-L', 'Ile', 'L-VLDL-C', 'IDL-TG', 'PUFA', 'HDL-FC', 'Citrate', 'L-VLDL-PL', 'M-VLDL-P', 'ApoB', 'S-HDL-FC', 'LDL-P', 'L-LDL-C', 'XXL-VLDL-P', 'M-HDL-L', 'M-LDL-L', 'M-HDL-CE', 'Total BCAA', 'Acetate', 'ApoA1', 'S-HDL-L', 'L-VLDL-FC', 'LDL-FC', 'Total-FA', 'S-HDL-PL', 'VLDL-PL', 'LDL-C', 'XXL-VLDL-L', 'VLDL-L', 'HDL size', 'IDL-PL', 'L-VLDL-TG', 'VLDL-C', 'SFA', 'HDL-CE', 'M-LDL-CE', 'Acetoacetate', 'Albumin', 'XL-HDL-CE', 'M-HDL-PL', 'XS-VLDL-P', 'Total-TG', 'Unsaturation', 'S-HDL-C', 'L-HDL-P', 'MUFA', 'Lactate', 'M-VLDL-PL', 'L-HDL-PL', 'IDL-C', 'LDL-CE', 'XL-VLDL-CE', 'XL-HDL-P', 'GlycA', 'IDL-FC', 'Total-CE', 'VLDL size', 'VLDL-TG', 'non-HDL-C', 'Gly', 'Total-FC', 'L-LDL-L', 'S-HDL-P', 'LDL size', 'XS-VLDL-FC', 'XL-HDL-L', 'L-HDL-FC', 'XL-HDL-PL', 'Omega-3', 'L-VLDL-P', 'L-HDL-L', 'HDL-PL', 'M-HDL-FC', 'M-LDL-FC', 'HDL-P', 'XL-VLDL-C', 'L-LDL-CE', 'VLDL-CE', 'L-LDL-FC', 'S-LDL-C', 'VLDL-P', 'XL-HDL-FC', 'S-VLDL-CE', 'His', 'S-VLDL-L', 'XL-VLDL-TG', 'S-LDL-L', 'S-LDL-PL', 'S-VLDL-PL', 'S-LDL-CE', 'M-LDL-P', 'S-HDL-CE', 'XS-VLDL-CE', 'M-VLDL-TG', 'S-VLDL-C', 'M-VLDL-CE', 'S-HDL-TG', 'id', 'Val', 'Cholines', 'Remnant-C', 'M-LDL-PL', 'M-HDL-P', 'Total-PL', 'Total-L', 'XL-VLDL-L', 'Ala', 'XL-VLDL-P', 'LDL-TG', 'S-LDL-FC', 'S-VLDL-FC', 'Leu', 'DHA', 'L-LDL-P', 'M-VLDL-L', 'S-VLDL-TG', 'LDL-L', 'L-HDL-TG', 'Phosphoglyc', 'Clinical LDL-C', 'HDL-C', 'bOHbutyrate', 'LDL-PL', 'L-VLDL-CE', 'S-VLDL-P', 'Phe', 'L-LDL-TG', 'Total-C', 'M-LDL-C', 'L-HDL-CE', 'Glucose', 'Creatinine', 'L-LDL-PL', 'Sphingomyelins', 'M-HDL-C', 'S-LDL-P', 'Total-P', 'VLDL-FC', 'Pyruvate', 'Gln', 'XS-VLDL-PL', 'L-HDL-C', 'Tyr', 'IDL-P', 'XS-VLDL-C', 'XS-VLDL-TG', 'LA', 'M-VLDL-C', 'M-LDL-TG', 'L-VLDL-L', 'XL-HDL-C', 'HDL-TG', 'M-HDL-TG', 'HDL-L', 'Acetone', 'IDL-CE', 'Phosphatidylc', 'M-VLDL-FC', 'Omega-6'}) and 2 missing columns ({'mean', 'std'}).
This happened while the csv dataset builder was generating data using
hf://datasets/shenmishajing/results/ASCVD/omega/input_gradients/Asthma_1/prote_metab/metab_Asthma_surv_res_individual_grads.csv (at revision 2d05a391ae3e57ddf40056ab948bb948f6a3941a)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1871, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 643, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2293, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2241, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
Unnamed: 0: int64
id: double
Ala: double
Gln: double
Gly: double
His: double
Ile: double
Leu: double
Total BCAA: double
Val: double
Phe: double
Tyr: double
ApoA1: double
ApoB: double
Clinical LDL-C: double
HDL-C: double
LDL-C: double
non-HDL-C: double
Remnant-C: double
Total-C: double
VLDL-C: double
HDL-CE: double
LDL-CE: double
Total-CE: double
VLDL-CE: double
DHA: double
LA: double
MUFA: double
Omega-3: double
Omega-6: double
PUFA: double
SFA: double
Total-FA: double
Unsaturation: double
Albumin: double
Creatinine: double
HDL-FC: double
LDL-FC: double
Total-FC: double
VLDL-FC: double
Citrate: double
Glucose: double
Lactate: double
Pyruvate: double
GlycA: double
Acetate: double
Acetoacetate: double
Acetone: double
bOHbutyrate: double
HDL-P: double
LDL-P: double
Total-P: double
VLDL-P: double
HDL size: double
LDL size: double
VLDL size: double
XXL-VLDL-L: double
XXL-VLDL-P: double
XL-VLDL-C: double
XL-VLDL-CE: double
XL-VLDL-L: double
XL-VLDL-P: double
XL-VLDL-TG: double
L-VLDL-C: double
L-VLDL-CE: double
L-VLDL-FC: double
L-VLDL-L: double
L-VLDL-P: double
L-VLDL-PL: double
L-VLDL-TG: double
M-VLDL-C: double
M-VLDL-CE: double
M-VLDL-FC: double
M-VLDL-L: double
M-VLDL-P: double
M-VLDL-PL: double
M-VLDL-TG: double
S-VLDL-C: double
S-VLDL-CE: double
S-VLDL-FC: double
S-VLDL-L: double
S-VLDL-P: double
S-VLDL-PL: double
S-VLDL-TG: double
XS-VLDL-C: double
XS-VLDL-CE: double
XS-VLDL-FC: double
XS-VLDL-L: double
XS-VLDL-P: double
XS-VLDL-PL: double
XS-VLDL-TG: double
IDL-C: double
IDL-CE: double
IDL-FC: double
IDL-L: double
IDL-P: double
IDL-PL: double
IDL-TG: double
L-LDL-C: double
L-LDL-CE: double
L-LDL-FC: double
L-LDL-L: double
L-LDL-P: double
L-LDL-PL: double
L-LDL-TG: double
M-LDL-C: double
M-LDL-CE: double
M-LDL-FC: double
M-LDL-L: double
M-LDL-P: double
M-LDL-PL: double
M-LDL-TG: double
S-LDL-C: double
S-LDL-CE: double
S-LDL-FC: double
S-LDL-L: double
S-LDL-P: double
S-LDL-PL: double
XL-HDL-C: double
XL-HDL-CE: double
XL-HDL-FC: double
XL-HDL-L: double
XL-HDL-P: double
XL-HDL-PL: double
L-HDL-C: double
L-HDL-CE: double
L-HDL-FC: double
L-HDL-L: double
L-HDL-P: double
L-HDL-PL: double
L-HDL-TG: double
M-HDL-C: double
M-HDL-CE: double
M-HDL-FC: double
M-HDL-L: double
M-HDL-P: double
M-HDL-PL: double
M-HDL-TG: double
S-HDL-C: double
S-HDL-CE: double
S-HDL-FC: double
S-HDL-L: double
S-HDL-P: double
S-HDL-PL: double
S-HDL-TG: double
Cholines: double
Phosphatidylc: double
Phosphoglyc: double
Sphingomyelins: double
HDL-PL: double
LDL-PL: double
Total-PL: double
VLDL-PL: double
HDL-L: double
LDL-L: double
Total-L: double
VLDL-L: double
HDL-TG: double
LDL-TG: double
Total-TG: double
VLDL-TG: double
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 18899
to
{'Unnamed: 0': Value(dtype='string', id=None), 'mean': Value(dtype='float64', id=None), 'std': Value(dtype='float64', id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1431, in compute_config_parquet_and_info_response
parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 992, in stream_convert_to_parquet
builder._prepare_split(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1742, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1873, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 160 new columns ({'IDL-L', 'XS-VLDL-L', 'Ile', 'L-VLDL-C', 'IDL-TG', 'PUFA', 'HDL-FC', 'Citrate', 'L-VLDL-PL', 'M-VLDL-P', 'ApoB', 'S-HDL-FC', 'LDL-P', 'L-LDL-C', 'XXL-VLDL-P', 'M-HDL-L', 'M-LDL-L', 'M-HDL-CE', 'Total BCAA', 'Acetate', 'ApoA1', 'S-HDL-L', 'L-VLDL-FC', 'LDL-FC', 'Total-FA', 'S-HDL-PL', 'VLDL-PL', 'LDL-C', 'XXL-VLDL-L', 'VLDL-L', 'HDL size', 'IDL-PL', 'L-VLDL-TG', 'VLDL-C', 'SFA', 'HDL-CE', 'M-LDL-CE', 'Acetoacetate', 'Albumin', 'XL-HDL-CE', 'M-HDL-PL', 'XS-VLDL-P', 'Total-TG', 'Unsaturation', 'S-HDL-C', 'L-HDL-P', 'MUFA', 'Lactate', 'M-VLDL-PL', 'L-HDL-PL', 'IDL-C', 'LDL-CE', 'XL-VLDL-CE', 'XL-HDL-P', 'GlycA', 'IDL-FC', 'Total-CE', 'VLDL size', 'VLDL-TG', 'non-HDL-C', 'Gly', 'Total-FC', 'L-LDL-L', 'S-HDL-P', 'LDL size', 'XS-VLDL-FC', 'XL-HDL-L', 'L-HDL-FC', 'XL-HDL-PL', 'Omega-3', 'L-VLDL-P', 'L-HDL-L', 'HDL-PL', 'M-HDL-FC', 'M-LDL-FC', 'HDL-P', 'XL-VLDL-C', 'L-LDL-CE', 'VLDL-CE', 'L-LDL-FC', 'S-LDL-C', 'VLDL-P', 'XL-HDL-FC', 'S-VLDL-CE', 'His', 'S-VLDL-L', 'XL-VLDL-TG', 'S-LDL-L', 'S-LDL-PL', 'S-VLDL-PL', 'S-LDL-CE', 'M-LDL-P', 'S-HDL-CE', 'XS-VLDL-CE', 'M-VLDL-TG', 'S-VLDL-C', 'M-VLDL-CE', 'S-HDL-TG', 'id', 'Val', 'Cholines', 'Remnant-C', 'M-LDL-PL', 'M-HDL-P', 'Total-PL', 'Total-L', 'XL-VLDL-L', 'Ala', 'XL-VLDL-P', 'LDL-TG', 'S-LDL-FC', 'S-VLDL-FC', 'Leu', 'DHA', 'L-LDL-P', 'M-VLDL-L', 'S-VLDL-TG', 'LDL-L', 'L-HDL-TG', 'Phosphoglyc', 'Clinical LDL-C', 'HDL-C', 'bOHbutyrate', 'LDL-PL', 'L-VLDL-CE', 'S-VLDL-P', 'Phe', 'L-LDL-TG', 'Total-C', 'M-LDL-C', 'L-HDL-CE', 'Glucose', 'Creatinine', 'L-LDL-PL', 'Sphingomyelins', 'M-HDL-C', 'S-LDL-P', 'Total-P', 'VLDL-FC', 'Pyruvate', 'Gln', 'XS-VLDL-PL', 'L-HDL-C', 'Tyr', 'IDL-P', 'XS-VLDL-C', 'XS-VLDL-TG', 'LA', 'M-VLDL-C', 'M-LDL-TG', 'L-VLDL-L', 'XL-HDL-C', 'HDL-TG', 'M-HDL-TG', 'HDL-L', 'Acetone', 'IDL-CE', 'Phosphatidylc', 'M-VLDL-FC', 'Omega-6'}) and 2 missing columns ({'mean', 'std'}).
This happened while the csv dataset builder was generating data using
hf://datasets/shenmishajing/results/ASCVD/omega/input_gradients/Asthma_1/prote_metab/metab_Asthma_surv_res_individual_grads.csv (at revision 2d05a391ae3e57ddf40056ab948bb948f6a3941a)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
Unnamed: 0
string | mean
float64 | std
float64 |
|---|---|---|
Ala
| 0 | 0.000001 |
Gln
| -0 | 0.000001 |
Gly
| 0 | 0.000002 |
His
| 0 | 0.000001 |
Ile
| 0 | 0.000001 |
Leu
| -0.000001 | 0.000002 |
Total BCAA
| -0.000002 | 0.000007 |
Val
| -0 | 0 |
Phe
| 0 | 0 |
Tyr
| 0 | 0 |
ApoA1
| -0.000004 | 0.000014 |
ApoB
| -0 | 0.000001 |
Clinical LDL-C
| -0.000004 | 0.000012 |
HDL-C
| 0.000001 | 0.000003 |
LDL-C
| -0.000008 | 0.000024 |
non-HDL-C
| -0.000006 | 0.000019 |
Remnant-C
| 0.000004 | 0.000014 |
Total-C
| 0.000005 | 0.000016 |
VLDL-C
| -0.000004 | 0.000015 |
HDL-CE
| 0.000004 | 0.000015 |
LDL-CE
| -0 | 0.000003 |
Total-CE
| 0 | 0.000004 |
VLDL-CE
| -0.000001 | 0.000003 |
DHA
| -0 | 0.000001 |
LA
| 0.000003 | 0.000015 |
MUFA
| 0.000011 | 0.000027 |
Omega-3
| -0.000001 | 0.000005 |
Omega-6
| 0.000005 | 0.00002 |
PUFA
| 0.000006 | 0.000019 |
SFA
| -0.000003 | 0.000007 |
Total-FA
| -0.000002 | 0.000016 |
Unsaturation
| 0.000001 | 0.000003 |
Albumin
| 0.000005 | 0.000028 |
Creatinine
| 0 | 0 |
HDL-FC
| -0.000001 | 0.000002 |
LDL-FC
| 0.000001 | 0.000004 |
Total-FC
| -0.000002 | 0.000006 |
VLDL-FC
| -0 | 0.000002 |
Citrate
| -0 | 0 |
Glucose
| -0.000011 | 0.000016 |
Lactate
| -0.000007 | 0.000031 |
Pyruvate
| -0 | 0.000001 |
GlycA
| -0.000001 | 0.000001 |
Acetate
| -0 | 0 |
Acetoacetate
| 0 | 0 |
Acetone
| 0 | 0 |
bOHbutyrate
| -0 | 0 |
HDL-P
| -0 | 0 |
LDL-P
| 0 | 0 |
Total-P
| 0 | 0 |
VLDL-P
| 0 | 0 |
HDL size
| 0 | 0.000002 |
LDL size
| 0 | 0.000001 |
VLDL size
| -0.000002 | 0.000014 |
XXL-VLDL-L
| -0.000001 | 0.000004 |
XXL-VLDL-P
| -0 | 0 |
XL-VLDL-C
| 0 | 0.000001 |
XL-VLDL-CE
| 0 | 0.000001 |
XL-VLDL-L
| 0.000002 | 0.000007 |
XL-VLDL-P
| 0 | 0 |
XL-VLDL-TG
| 0 | 0.000001 |
L-VLDL-C
| 0 | 0.000001 |
L-VLDL-CE
| -0 | 0 |
L-VLDL-FC
| -0 | 0.000002 |
L-VLDL-L
| -0.000001 | 0.000003 |
L-VLDL-P
| 0 | 0 |
L-VLDL-PL
| 0 | 0.000001 |
L-VLDL-TG
| 0 | 0.000001 |
M-VLDL-C
| 0.000001 | 0.000002 |
M-VLDL-CE
| 0.000001 | 0.000002 |
M-VLDL-FC
| 0 | 0 |
M-VLDL-L
| -0.000001 | 0.000004 |
M-VLDL-P
| -0 | 0 |
M-VLDL-PL
| 0 | 0.000001 |
M-VLDL-TG
| 0.000002 | 0.000007 |
S-VLDL-C
| -0 | 0.000002 |
S-VLDL-CE
| -0.000001 | 0.000002 |
S-VLDL-FC
| -0 | 0.000001 |
S-VLDL-L
| 0.000002 | 0.000006 |
S-VLDL-P
| 0 | 0 |
S-VLDL-PL
| -0 | 0.000001 |
S-VLDL-TG
| -0 | 0.000001 |
XS-VLDL-C
| -0 | 0 |
XS-VLDL-CE
| 0 | 0.000001 |
XS-VLDL-FC
| 0 | 0.000001 |
XS-VLDL-L
| -0 | 0.000001 |
XS-VLDL-P
| -0 | 0 |
XS-VLDL-PL
| -0 | 0.000001 |
XS-VLDL-TG
| 0 | 0.000001 |
IDL-C
| 0.000002 | 0.000006 |
IDL-CE
| 0.000001 | 0.000003 |
IDL-FC
| -0.000001 | 0.000004 |
IDL-L
| -0.000002 | 0.000006 |
IDL-P
| 0 | 0 |
IDL-PL
| 0.000001 | 0.000002 |
IDL-TG
| -0 | 0 |
L-LDL-C
| 0.000001 | 0.000003 |
L-LDL-CE
| 0.000001 | 0.000004 |
L-LDL-FC
| -0.000001 | 0.000004 |
L-LDL-L
| 0.000003 | 0.000009 |
End of preview.
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