Datasets:

ArXiv:
License:
Dataset Preview
The full dataset viewer is not available (click to read why). Only showing a preview of the rows.
The dataset generation failed
Error code:   DatasetGenerationError
Exception:    ArrowNotImplementedError
Message:      Cannot write struct type 'hubbards' with no child field to Parquet. Consider adding a dummy child field.
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1831, in _prepare_split_single
                  writer.write_table(table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 642, in write_table
                  self._build_writer(inferred_schema=pa_table.schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 457, in _build_writer
                  self.pa_writer = self._WRITER_CLASS(self.stream, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/pyarrow/parquet/core.py", line 1010, in __init__
                  self.writer = _parquet.ParquetWriter(
                File "pyarrow/_parquet.pyx", line 2157, in pyarrow._parquet.ParquetWriter.__cinit__
                File "pyarrow/error.pxi", line 154, in pyarrow.lib.pyarrow_internal_check_status
                File "pyarrow/error.pxi", line 91, in pyarrow.lib.check_status
              pyarrow.lib.ArrowNotImplementedError: Cannot write struct type 'hubbards' with no child field to Parquet. Consider adding a dummy child field.
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1847, in _prepare_split_single
                  num_examples, num_bytes = writer.finalize()
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 661, in finalize
                  self._build_writer(self.schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 457, in _build_writer
                  self.pa_writer = self._WRITER_CLASS(self.stream, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/pyarrow/parquet/core.py", line 1010, in __init__
                  self.writer = _parquet.ParquetWriter(
                File "pyarrow/_parquet.pyx", line 2157, in pyarrow._parquet.ParquetWriter.__cinit__
                File "pyarrow/error.pxi", line 154, in pyarrow.lib.pyarrow_internal_check_status
                File "pyarrow/error.pxi", line 91, in pyarrow.lib.check_status
              pyarrow.lib.ArrowNotImplementedError: Cannot write struct type 'hubbards' with no child field to Parquet. Consider adding a dummy child field.
              
              The above exception was the direct cause of the following exception:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1456, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1055, in convert_to_parquet
                  builder.download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 894, in download_and_prepare
                  self._download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 970, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1702, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1858, in _prepare_split_single
                  raise DatasetGenerationError("An error occurred while generating the dataset") from e
              datasets.exceptions.DatasetGenerationError: An error occurred while generating the dataset

Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.

Pu
dict
Pm
dict
In
dict
Pa
dict
Li
dict
Gd
dict
Be
dict
Sc
dict
Au
dict
Re
dict
Ce
dict
Ag
dict
Tl
dict
Y
dict
Ca
dict
Zn
dict
He
dict
Cd
dict
Si
dict
U
dict
Se
dict
Cr
dict
Xe
dict
Rb
dict
Pd
dict
Eu
dict
W
dict
Er
dict
Yb
dict
Tm
dict
Sr
dict
Bi
dict
Co
dict
Dy
dict
Sm
dict
Ga
dict
I
dict
Cl
dict
Ti
dict
Ho
dict
Br
dict
Lu
dict
C
dict
Nb
dict
Ar
dict
Os
dict
Rh
dict
B
dict
S
dict
K
dict
Ta
dict
V
dict
Cu
dict
Ir
dict
Pt
dict
Ge
dict
Hg
dict
Ru
dict
Hf
dict
Nd
dict
Sb
dict
Cs
dict
Tb
dict
Fe
dict
Mn
dict
Ba
dict
As
dict
Th
dict
Pb
dict
N
dict
Mg
dict
Te
dict
Mo
dict
Sn
dict
O
dict
La
dict
Zr
dict
H
dict
Ac
dict
F
dict
Np
dict
Ne
dict
Na
dict
Kr
dict
Tc
dict
Al
dict
Ni
dict
P
dict
Pr
dict
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-27.9768218,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-18.77968963,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-7.68567875,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-9.41125813,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-5.71884841,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-27.96359483,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-15.03970635,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-12.49094887,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-3.22543615,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-24.78800716,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-11.84319621,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-8.15269991,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-6.66104057,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-19.28093256,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-1.93153898,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-2.2300708,"composi(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-0.02165726,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-0.74560783,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-10.84140792,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-22.27214608,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-224.46562702,"comp(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-19.03092377,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-0.04027387,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-7.58544383,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-5.21837678,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-20.59273416,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-12.95412021,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-13.48551152,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-13.40426415,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-13.40768582,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-4.8816759,"composi(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-15.47537396,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-14.07439142,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-13.58792741,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-18.62307921,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-11.65295539,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-2.71888227,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-7.38352021,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-23.41885424,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-13.54600454,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-2.88425306,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-8.89904941,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-36.79692766,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-10.10334713,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-0.04024922,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-22.44679299,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-7.27165212,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-80.45979843,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-132.17183749,"comp(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-21.21294446,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-11.81537868,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-8.96201137,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-3.74513504,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-8.8565415,"composi(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-6.08256756,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-9.01549051,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-0.36789215,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-18.47312583,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-19.84766105,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-18.89368634,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-8.29310977,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-25.96005234,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-13.70534919,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-16.54322946,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-260.78879133,"comp(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-3.81952171,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-9.36410795,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-7.44188808,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-3.57680932,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-66.61156576,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-1.49982141,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-9.42077794,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-10.92071152,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-7.66059188,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-29.63481618,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-19.57798178,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-17.03708809,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-13.57751518,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-16.31259976,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-7.2386386,"composi(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-101.84954747,"comp(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-0.02128077,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-37.0071298,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-0.04490603,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-20.68882441,"compo(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-3.72747094,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-5.48422812,"compos(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-227.18805736,"comp(...TRUNCATED)
{"@module":"pymatgen.entries.computed_entries","@class":"ComputedEntry","energy":-18.97374667,"compo(...TRUNCATED)

Meta Open Materials 2024 (OMat24) Dataset

Overview

Several datasets were utilized in this work. We provide open access to all datasets used to help accelerate research in the community. This includes the OMat24 dataset as well as our modified sAlex dataset. Details on the different datasets are provided below.

The OMat24 datasets can be used with the FAIRChem package. See section on "How to read the data" below for a minimal example.

Datasets

OMat24 Dataset

The OMat24 dataset contains a mix of single point calculations of non-equilibrium structures and structural relaxations. The dataset contains structures labeled with total energy (eV), forces (eV/A) and stress (eV/A^3). The dataset is provided in ASE DB compatible lmdb files.

We provide two splits - train and validation. Each split is comprised of several subdatasets based on the different input generation strategies, see paper for more details.

The OMat24 train and validation splits are fully compatible with the Matbench Discovery benchmark test set.

  1. The splits do not contain any structure that has a protostructure label present in the initial or relaxed structures of the WBM dataset.
  2. The splits do not include any structure that was generated starting from an Alexandria relaxed structure with protostructure lable in the intitial or relaxed structures of the WBM datset.
Train
Sub-dataset Size Download
rattled-1000 11,388,510 rattled-1000.tar.gz
rattled-1000-subsampled 3,879,741 rattled-1000-subsampled.tar.gz
rattled-500 6,922,197 rattled-500.tar.gz
rattled-500-subsampled 3,975,416 rattled-500-subsampled.tar.gz
rattled-300 6,319,139 rattled-300.tar.gz
rattled-300-subsampled 3,464,007 rattled-300-subsampled.tar.gz
aimd-from-PBE-1000-npt 21,269,486 aimd-from-PBE-1000-npt.tar.gz
aimd-from-PBE-1000-nvt 20,256,650 aimd-from-PBE-1000-nvt.tar.gz
aimd-from-PBE-3000-npt 6,076,290 aimd-from-PBE-3000-npt.tar.gz
aimd-from-PBE-3000-nvt 7,839,846 aimd-from-PBE-3000-nvt.tar.gz
rattled-relax 9,433,303 rattled-relax.tar.gz
Total 100,824,585 -
Validation

Models were evaluated on a ~1M subset for training efficiency. We provide that set below.

NOTE: The original validation sets contained a duplicated structures. Corrected validation sets were uploaded on 20/12/24. Please see this issue for more details, an re-download the correct version of the validation sets if needed.

Sub-dataset Size Download
rattled-1000 117,004 rattled-1000.tar.gz
rattled-1000-subsampled 39,785 rattled-1000-subsampled.tar.gz
rattled-500 71,522 rattled-500.tar.gz
rattled-500-subsampled 41,021 rattled-500-subsampled.tar.gz
rattled-300 65,235 rattled-300.tar.gz
rattled-300-subsampled 35,579 rattled-300-subsampled.tar.gz
aimd-from-PBE-1000-npt 212,737 aimd-from-PBE-1000-npt.tar.gz
aimd-from-PBE-1000-nvt 205,165 aimd-from-PBE-1000-nvt.tar.gz
aimd-from-PBE-3000-npt 62,130 aimd-from-PBE-3000-npt.tar.gz
aimd-from-PBE-3000-nvt 79,977 aimd-from-PBE-3000-nvt.tar.gz
rattled-relax 95,206 rattled-relax.tar.gz
Total 1,025,361 -

sAlex Dataset

We also provide the sAlex dataset used for fine-tuning of our OMat models. sAlex is a subsampled, Matbench-Discovery compliant, version of the original Alexandria. sAlex was created by removing structures matched in WBM and only sampling structure along a trajectory with an energy difference greater than 10 meV/atom. For full details, please see the manuscript.

Dataset Split Size Download
sAlex train 10,447,765 train.tar.gz
sAlex val 553,218 val.tar.gz

How to read the data

The OMat24 and sAlex datasets can be accessed with the fairchem library. This package can be installed with:

pip install fairchem-core

Dataset files are written as AseLMDBDatabase objects which are an implementation of an ASE Database, in LMDB format. A single **.aselmdb* file can be read and queried like any other ASE DB (not recommended as there are many files!).

You can also read many DB files at once and access atoms objects using the AseDBDataset class.

For example to read the rattled-relax subdataset,

from fairchem.core.datasets import AseDBDataset

dataset_path = "/path/to/omat24/train/rattled-relax"
config_kwargs = {} # see tutorial on additional configuration

dataset = AseDBDataset(config=dict(src=dataset_path, **config_kwargs))

# atoms objects can be retrieved by index
atoms = dataset.get_atoms(0)

To read more than one subdataset you can simply pass a list of subdataset paths,

from fairchem.core.datasets import AseDBDataset

config_kwargs = {} # see tutorial on additional configuration
dataset_paths = [
      "/path/to/omat24/train/rattled-relax",
      "/path/to/omat24/train/rattled-1000-subsampled",
      "/path/to/omat24/train/rattled-1000"
]
dataset = AseDBDataset(config=dict(src=dataset_paths, **config_kwargs))

To read all of the OMat24 training or validations splits simply pass the paths to all subdatasets.

Support

If you run into any issues regarding feel free to post your questions or comments on any of the following platforms:

Citation

The OMat24 dataset is licensed under a Creative Commons Attribution 4.0 License. If you use this work, please cite:

@misc{barroso_omat24,
      title={Open Materials 2024 (OMat24) Inorganic Materials Dataset and Models}, 
      author={Luis Barroso-Luque and Muhammed Shuaibi and Xiang Fu and Brandon M. Wood and Misko Dzamba and Meng Gao and Ammar Rizvi and C. Lawrence Zitnick and Zachary W. Ulissi},
      year={2024},
      eprint={2410.12771},
      archivePrefix={arXiv},
      primaryClass={cond-mat.mtrl-sci},
      url={https://arxiv.org/abs/2410.12771}, 
}

### We hope to move our datasets and models to the Hugging Face Hub in the near future to make it more accessible by the community. ###

Downloads last month
213

Space using facebook/OMAT24 1

Collection including facebook/OMAT24